Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC144BQ3MJ40 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 ACTG1P3-201ENST00000431775 1114 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 FAM86LP-201ENST00000478302 853 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 AL359711.2-201ENST00000563105 872 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 MIR5189-201ENST00000577370 114 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 BRI3BPP1-201ENST00000594224 787 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 CICP23-201ENST00000605013 2741 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 AC087481.3-201ENST00000602886 1894 ntBASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC144BQ3MJ40 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 PDIA3P1-201ENST00000471856 1510 ntBASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 FAM86MP-201ENST00000340703 885 ntBASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 TDH-203ENST00000531764 1110 ntBASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms