Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LY6E-215ENST00000523847 427 ntTSL 3 BASIC10.78□□□□□ -0.68
PRKDCP78527 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
PRKDCP78527 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC10.78□□□□□ -0.68
PRKDCP78527 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
PRKDCP78527 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC10.78□□□□□ -0.68
PRKDCP78527 MARK2P16-201ENST00000605714 1723 ntBASIC10.78□□□□□ -0.68
PRKDCP78527 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC10.78□□□□□ -0.68
PRKDCP78527 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
PRKDCP78527 RNA5SP359-201ENST00000364838 113 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC10.77□□□□□ -0.68
PRKDCP78527 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC10.77□□□□□ -0.68
PRKDCP78527 SLC25A15P1-201ENST00000456738 342 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 SLC25A15P3-201ENST00000505530 290 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 BCRP4-201ENST00000506079 804 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 F11R-204ENST00000537746 1245 ntTSL 2 BASIC10.77□□□□□ -0.68
PRKDCP78527 RN7SL300P-201ENST00000582522 318 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 AL512324.3-201ENST00000619383 882 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 AC084364.1-201ENST00000551967 1556 ntBASIC10.77□□□□□ -0.68
PRKDCP78527 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC10.77□□□□□ -0.68
PRKDCP78527 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
PRKDCP78527 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.68
PRKDCP78527 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
PRKDCP78527 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC10.77□□□□□ -0.69
PRKDCP78527 HNRNPA1P25-201ENST00000422644 937 ntBASIC10.77□□□□□ -0.69
PRKDCP78527 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 INO80E-209ENST00000567254 625 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC10.77□□□□□ -0.69
PRKDCP78527 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.69
PRKDCP78527 AL121949.3-201ENST00000406684 385 ntBASIC10.77□□□□□ -0.69
PRKDCP78527 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC10.77□□□□□ -0.69
PRKDCP78527 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC10.77□□□□□ -0.69
PRKDCP78527 RBPMSLP-201ENST00000433427 502 ntBASIC10.77□□□□□ -0.69
PRKDCP78527 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 HLF-202ENST00000430986 1385 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.69
PRKDCP78527 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC10.77□□□□□ -0.69
PRKDCP78527 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC10.77□□□□□ -0.69
PRKDCP78527 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC10.77□□□□□ -0.69
PRKDCP78527 DPY19L2P5-201ENST00000456300 331 ntBASIC10.77□□□□□ -0.69
PRKDCP78527 BPIFB5P-201ENST00000457066 1099 ntBASIC10.77□□□□□ -0.69
PRKDCP78527 IGHV1-12-201ENST00000518307 205 ntBASIC10.77□□□□□ -0.69
PRKDCP78527 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.69
PRKDCP78527 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
PRKDCP78527 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
PRKDCP78527 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 PYY2-201ENST00000315776 282 ntBASIC10.76□□□□□ -0.69
PRKDCP78527 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
PRKDCP78527 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC10.76□□□□□ -0.69
PRKDCP78527 ACTG1P19-201ENST00000418987 1116 ntBASIC10.76□□□□□ -0.69
PRKDCP78527 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC10.76□□□□□ -0.69
PRKDCP78527 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC10.76□□□□□ -0.69
PRKDCP78527 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC10.76□□□□□ -0.69
PRKDCP78527 PRMT1P1-201ENST00000604252 1009 ntBASIC10.76□□□□□ -0.69
PRKDCP78527 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 SKA2-202ENST00000437036 625 ntTSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 SCARNA12-201ENST00000459155 270 ntBASIC10.76□□□□□ -0.69
PRKDCP78527 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC10.76□□□□□ -0.69
PRKDCP78527 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC10.76□□□□□ -0.69
PRKDCP78527 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms