Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.18■□□□□ 0.18
HDAC4P56524 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
HDAC4P56524 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.18■□□□□ 0.18
HDAC4P56524 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
HDAC4P56524 AC009118.2-201ENST00000613275 655 ntBASIC16.18■□□□□ 0.18
HDAC4P56524 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HDAC4P56524 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HDAC4P56524 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HDAC4P56524 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.18■□□□□ 0.18
HDAC4P56524 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.18■□□□□ 0.18
HDAC4P56524 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HDAC4P56524 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HDAC4P56524 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HDAC4P56524 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC4P56524 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 AC007326.2-201ENST00000624224 7579 ntBASIC16.17■□□□□ 0.18
HDAC4P56524 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC4P56524 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HDAC4P56524 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC4P56524 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC4P56524 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.17■□□□□ 0.18
HDAC4P56524 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.17■□□□□ 0.18
HDAC4P56524 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.17■□□□□ 0.18
HDAC4P56524 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.17■□□□□ 0.18
HDAC4P56524 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.17■□□□□ 0.18
HDAC4P56524 AC011467.4-201ENST00000594891 528 ntBASIC16.17■□□□□ 0.18
HDAC4P56524 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC4P56524 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HDAC4P56524 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC4P56524 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 AL365209.1-201ENST00000624418 6473 ntBASIC16.16■□□□□ 0.18
HDAC4P56524 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.16■□□□□ 0.18
HDAC4P56524 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.16■□□□□ 0.18
HDAC4P56524 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.16■□□□□ 0.18
HDAC4P56524 RN7SL204P-201ENST00000582831 262 ntBASIC16.16■□□□□ 0.18
HDAC4P56524 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 AC067930.6-201ENST00000623257 4947 ntBASIC16.16■□□□□ 0.18
HDAC4P56524 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC4P56524 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC4P56524 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC4P56524 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms