Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LIM2P55344 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
LIM2P55344 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 AC106881.1-201ENST00000605849 3329 ntBASIC14.67□□□□□ -0.06
LIM2P55344 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.67□□□□□ -0.06
LIM2P55344 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.67□□□□□ -0.06
LIM2P55344 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 AC104596.2-201ENST00000512793 793 ntBASIC14.67□□□□□ -0.06
LIM2P55344 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.67□□□□□ -0.06
LIM2P55344 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 AC123567.1-201ENST00000548294 1261 ntBASIC14.67□□□□□ -0.06
LIM2P55344 AC190387.1-201ENST00000551683 408 ntBASIC14.67□□□□□ -0.06
LIM2P55344 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
LIM2P55344 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.67□□□□□ -0.06
LIM2P55344 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 CHCHD2P3-201ENST00000603038 451 ntBASIC14.67□□□□□ -0.06
LIM2P55344 MIR8072-201ENST00000614241 80 ntBASIC14.67□□□□□ -0.06
LIM2P55344 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 KRT8P44-201ENST00000441609 1350 ntBASIC14.67□□□□□ -0.06
LIM2P55344 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
LIM2P55344 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.67□□□□□ -0.06
LIM2P55344 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIM2P55344 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms