Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC107373.2-201ENST00000607735 490 ntBASIC15.24■□□□□ 0.03
LIMK1P53667 AC018635.2-201ENST00000608625 364 ntBASIC15.24■□□□□ 0.03
LIMK1P53667 AP003419.4-201ENST00000616071 517 ntBASIC15.24■□□□□ 0.03
LIMK1P53667 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC15.24■□□□□ 0.03
LIMK1P53667 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
LIMK1P53667 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.24■□□□□ 0.03
LIMK1P53667 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
LIMK1P53667 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIMK1P53667 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.24■□□□□ 0.03
LIMK1P53667 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 KRT8P35-201ENST00000483942 1338 ntBASIC15.23■□□□□ 0.03
LIMK1P53667 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.23■□□□□ 0.03
LIMK1P53667 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.23■□□□□ 0.03
LIMK1P53667 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.23■□□□□ 0.03
LIMK1P53667 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 AC114501.1-201ENST00000445949 172 ntBASIC15.23■□□□□ 0.03
LIMK1P53667 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 PRKXP1-201ENST00000561423 1122 ntBASIC15.23■□□□□ 0.03
LIMK1P53667 FGFR3P5-201ENST00000564496 886 ntBASIC15.23■□□□□ 0.03
LIMK1P53667 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.23■□□□□ 0.03
LIMK1P53667 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.23■□□□□ 0.03
LIMK1P53667 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
LIMK1P53667 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK1P53667 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK1P53667 AL121723.1-201ENST00000445194 1519 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK1P53667 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK1P53667 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 AC136604.1-201ENST00000418535 575 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 Z97180.1-201ENST00000445173 988 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 EEF1DP6-201ENST00000449232 372 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 AC104784.1-201ENST00000473096 294 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 SERPINA13P-202ENST00000478994 924 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK1P53667 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK1P53667 AC007663.3-201ENST00000609632 465 ntBASIC15.22■□□□□ 0.03
LIMK1P53667 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK1P53667 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms