Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC21.02■□□□□ 0.96
MSH6P52701 FAU-202ENST00000434372 533 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH6P52701 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH6P52701 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH6P52701 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC21.02■□□□□ 0.96
MSH6P52701 MEG3_2.1-201ENST00000611456 105 ntBASIC21.02■□□□□ 0.96
MSH6P52701 FO393412.1-201ENST00000619841 382 ntBASIC21.02■□□□□ 0.96
MSH6P52701 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH6P52701 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MSH6P52701 MBLAC2-202ENST00000514906 1936 ntBASIC21.02■□□□□ 0.95
MSH6P52701 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH6P52701 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
MSH6P52701 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
MSH6P52701 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
MSH6P52701 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH6P52701 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 AL008718.2-201ENST00000609206 1313 ntBASIC21.01■□□□□ 0.95
MSH6P52701 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 AC078875.1-201ENST00000431907 724 ntBASIC21.01■□□□□ 0.95
MSH6P52701 AC012441.2-201ENST00000444843 739 ntBASIC21.01■□□□□ 0.95
MSH6P52701 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 REEP5-205ENST00000504247 480 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 AC008723.1-201ENST00000506922 207 ntBASIC21.01■□□□□ 0.95
MSH6P52701 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC21.01■□□□□ 0.95
MSH6P52701 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC21.01■□□□□ 0.95
MSH6P52701 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 AL645728.2-202ENST00000641679 227 ntBASIC21.01■□□□□ 0.95
MSH6P52701 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH6P52701 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
MSH6P52701 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH6P52701 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC21■□□□□ 0.95
MSH6P52701 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC21■□□□□ 0.95
MSH6P52701 AL592076.1-201ENST00000424448 303 ntBASIC21■□□□□ 0.95
MSH6P52701 ALG1L13P-202ENST00000519320 584 ntBASIC21■□□□□ 0.95
MSH6P52701 CCNC-217ENST00000523985 958 ntTSL 2 BASIC21■□□□□ 0.95
MSH6P52701 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
MSH6P52701 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC21■□□□□ 0.95
MSH6P52701 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
MSH6P52701 AC006449.6-201ENST00000612330 2296 ntBASIC21■□□□□ 0.95
MSH6P52701 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 AMT-239ENST00000636865 1914 ntTSL 5 BASIC21■□□□□ 0.95
MSH6P52701 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC21■□□□□ 0.95
MSH6P52701 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MSH6P52701 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
MSH6P52701 PCDHA14-201ENST00000506751 2298 ntBASIC21■□□□□ 0.95
MSH6P52701 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
MSH6P52701 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC20.99■□□□□ 0.95
MSH6P52701 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC20.99■□□□□ 0.95
MSH6P52701 RN7SL596P-201ENST00000582123 288 ntBASIC20.99■□□□□ 0.95
MSH6P52701 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH6P52701 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MSH6P52701 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH6P52701 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH6P52701 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms