Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.74□□□□□ -0.05
SDC1P18827 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.74□□□□□ -0.05
SDC1P18827 SDHAP3-202ENST00000515467 728 ntBASIC14.74□□□□□ -0.05
SDC1P18827 AC069120.2-201ENST00000524091 540 ntBASIC14.74□□□□□ -0.05
SDC1P18827 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.74□□□□□ -0.05
SDC1P18827 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.74□□□□□ -0.05
SDC1P18827 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.74□□□□□ -0.05
SDC1P18827 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 AC015911.4-201ENST00000588022 1070 ntBASIC14.74□□□□□ -0.05
SDC1P18827 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 AC012508.2-201ENST00000567613 1472 ntBASIC14.74□□□□□ -0.05
SDC1P18827 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
SDC1P18827 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.73□□□□□ -0.05
SDC1P18827 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.73□□□□□ -0.05
SDC1P18827 AC027369.6-201ENST00000525520 931 ntBASIC14.73□□□□□ -0.05
SDC1P18827 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.73□□□□□ -0.05
SDC1P18827 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 AC044860.1-202ENST00000559481 777 ntBASIC14.73□□□□□ -0.05
SDC1P18827 AC140878.1-201ENST00000565277 250 ntBASIC14.73□□□□□ -0.05
SDC1P18827 AL844908.2-201ENST00000609461 460 ntBASIC14.73□□□□□ -0.05
SDC1P18827 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 AC138969.3-201ENST00000546612 1459 ntBASIC14.73□□□□□ -0.05
SDC1P18827 AC138932.2-201ENST00000548268 1459 ntBASIC14.73□□□□□ -0.05
SDC1P18827 AC126755.4-201ENST00000549796 1459 ntBASIC14.73□□□□□ -0.05
SDC1P18827 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.73□□□□□ -0.05
SDC1P18827 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDC1P18827 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.73□□□□□ -0.05
SDC1P18827 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.72□□□□□ -0.05
SDC1P18827 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SDC1P18827 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SDC1P18827 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.72□□□□□ -0.05
SDC1P18827 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms