Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.02□□□□□ -0.16
FREM3P0C091 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.02□□□□□ -0.16
FREM3P0C091 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.02□□□□□ -0.16
FREM3P0C091 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
FREM3P0C091 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.02□□□□□ -0.16
FREM3P0C091 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.02□□□□□ -0.16
FREM3P0C091 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.02□□□□□ -0.16
FREM3P0C091 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.02□□□□□ -0.16
FREM3P0C091 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FREM3P0C091 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FREM3P0C091 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FREM3P0C091 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
FREM3P0C091 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.02□□□□□ -0.16
FREM3P0C091 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.17
FREM3P0C091 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
FREM3P0C091 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.02□□□□□ -0.17
FREM3P0C091 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.02□□□□□ -0.17
FREM3P0C091 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
FREM3P0C091 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.02□□□□□ -0.17
FREM3P0C091 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
FREM3P0C091 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FREM3P0C091 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.02□□□□□ -0.17
FREM3P0C091 AC026410.3-201ENST00000514280 936 ntBASIC14.02□□□□□ -0.17
FREM3P0C091 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.02□□□□□ -0.17
FREM3P0C091 AC104989.1-201ENST00000519711 778 ntBASIC14.02□□□□□ -0.17
FREM3P0C091 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.02□□□□□ -0.17
FREM3P0C091 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.02□□□□□ -0.17
FREM3P0C091 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.02□□□□□ -0.17
FREM3P0C091 AL022328.1-201ENST00000610050 478 ntBASIC14.02□□□□□ -0.17
FREM3P0C091 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.02□□□□□ -0.17
FREM3P0C091 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
FREM3P0C091 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.01□□□□□ -0.17
FREM3P0C091 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.01□□□□□ -0.17
FREM3P0C091 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 AC068418.2-201ENST00000577309 3703 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.01□□□□□ -0.17
FREM3P0C091 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 BAATP1-201ENST00000412284 1225 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.01□□□□□ -0.17
FREM3P0C091 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.01□□□□□ -0.17
FREM3P0C091 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.01□□□□□ -0.17
FREM3P0C091 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.01□□□□□ -0.17
FREM3P0C091 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
FREM3P0C091 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 AL033527.4-201ENST00000641026 673 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 LINC02228-204ENST00000642115 2962 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 AC127383.1-201ENST00000444697 1800 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.01□□□□□ -0.17
FREM3P0C091 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 C18orf15-201ENST00000623680 2534 ntBASIC14.01□□□□□ -0.17
FREM3P0C091 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FREM3P0C091 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.01□□□□□ -0.17
FREM3P0C091 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14□□□□□ -0.17
FREM3P0C091 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14□□□□□ -0.17
FREM3P0C091 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14□□□□□ -0.17
FREM3P0C091 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14□□□□□ -0.17
FREM3P0C091 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14□□□□□ -0.17
FREM3P0C091 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FREM3P0C091 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14□□□□□ -0.17
FREM3P0C091 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14□□□□□ -0.17
FREM3P0C091 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14□□□□□ -0.17
FREM3P0C091 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14□□□□□ -0.17
FREM3P0C091 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14□□□□□ -0.17
FREM3P0C091 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
FREM3P0C091 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14□□□□□ -0.17
FREM3P0C091 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms