Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXC4P09017 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.94□□□□□ -0.02
HOXC4P09017 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 BRWD1P1-201ENST00000401091 371 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 PFN1P12-201ENST00000455938 534 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 RPL13AP20-201ENST00000459725 609 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.94□□□□□ -0.02
HOXC4P09017 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.94□□□□□ -0.02
HOXC4P09017 AC138466.3-201ENST00000619983 221 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
HOXC4P09017 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.94□□□□□ -0.02
HOXC4P09017 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HOXC4P09017 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
HOXC4P09017 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 MROH4P-201ENST00000431302 1578 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 AC103702.1-201ENST00000548801 2630 ntBASIC14.94□□□□□ -0.02
HOXC4P09017 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HOXC4P09017 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HOXC4P09017 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 HOMER2P2-201ENST00000451621 847 ntBASIC14.93□□□□□ -0.02
HOXC4P09017 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 AC026434.2-201ENST00000506094 1078 ntBASIC14.93□□□□□ -0.02
HOXC4P09017 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.93□□□□□ -0.02
HOXC4P09017 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.93□□□□□ -0.02
HOXC4P09017 RN7SL713P-201ENST00000582127 302 ntBASIC14.93□□□□□ -0.02
HOXC4P09017 EEF1DP1-201ENST00000585891 896 ntBASIC14.93□□□□□ -0.02
HOXC4P09017 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.93□□□□□ -0.02
HOXC4P09017 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 AC009542.2-202ENST00000619004 1067 ntBASIC14.93□□□□□ -0.02
HOXC4P09017 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.93□□□□□ -0.02
HOXC4P09017 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 WASH3P-207ENST00000560956 1394 ntBASIC14.93□□□□□ -0.02
HOXC4P09017 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
HOXC4P09017 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HOXC4P09017 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXC4P09017 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.93□□□□□ -0.02
HOXC4P09017 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXC4P09017 CLUHP2-201ENST00000426660 1303 ntBASIC14.92□□□□□ -0.02
HOXC4P09017 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXC4P09017 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HOXC4P09017 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXC4P09017 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXC4P09017 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HOXC4P09017 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.92□□□□□ -0.02
HOXC4P09017 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HOXC4P09017 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms