Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC13.96□□□□□ -0.17
SPTA1P02549 AL512430.1-201ENST00000392575 860 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 AL139094.1-201ENST00000405549 1188 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 ACTG1P2-201ENST00000415776 1125 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 ACTG1P11-201ENST00000425411 1125 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 AC079112.1-201ENST00000454972 939 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.96□□□□□ -0.17
SPTA1P02549 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 AC068587.8-201ENST00000641239 219 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 KRT8P4-201ENST00000509735 1454 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
SPTA1P02549 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
SPTA1P02549 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC13.96□□□□□ -0.17
SPTA1P02549 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SPTA1P02549 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC13.96□□□□□ -0.17
SPTA1P02549 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
SPTA1P02549 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 AP003171.2-201ENST00000528208 925 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 AP001065.2-201ENST00000617205 644 ntBASIC13.96□□□□□ -0.17
SPTA1P02549 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SPTA1P02549 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC13.96□□□□□ -0.17
SPTA1P02549 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SPTA1P02549 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SPTA1P02549 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.96□□□□□ -0.17
SPTA1P02549 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.96□□□□□ -0.18
SPTA1P02549 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.96□□□□□ -0.18
SPTA1P02549 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
SPTA1P02549 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
SPTA1P02549 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.96□□□□□ -0.18
SPTA1P02549 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
SPTA1P02549 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
SPTA1P02549 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
SPTA1P02549 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
SPTA1P02549 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
SPTA1P02549 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SPTA1P02549 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC13.96□□□□□ -0.18
SPTA1P02549 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 DPM3-202ENST00000368399 517 ntBASIC13.95□□□□□ -0.18
SPTA1P02549 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.95□□□□□ -0.18
SPTA1P02549 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.95□□□□□ -0.18
SPTA1P02549 RPL18P13-201ENST00000478088 569 ntBASIC13.95□□□□□ -0.18
SPTA1P02549 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 AL133499.1-201ENST00000596207 608 ntBASIC13.95□□□□□ -0.18
SPTA1P02549 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.95□□□□□ -0.18
SPTA1P02549 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.95□□□□□ -0.18
SPTA1P02549 AC011742.3-201ENST00000439053 820 ntBASIC13.95□□□□□ -0.18
SPTA1P02549 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC13.95□□□□□ -0.18
SPTA1P02549 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SPTA1P02549 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.95□□□□□ -0.18
SPTA1P02549 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.95□□□□□ -0.18
SPTA1P02549 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms