Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC005730.2-201ENST00000564549 1184 ntBASIC20.04■□□□□ 0.8
COL3A1P02461 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC20.04■□□□□ 0.8
COL3A1P02461 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC20.03■□□□□ 0.8
COL3A1P02461 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 FKBP4P6-201ENST00000457486 1332 ntBASIC20.03■□□□□ 0.8
COL3A1P02461 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 AC010141.1-201ENST00000411585 623 ntBASIC20.03■□□□□ 0.8
COL3A1P02461 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.03■□□□□ 0.8
COL3A1P02461 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 AL354877.1-201ENST00000424412 413 ntBASIC20.03■□□□□ 0.8
COL3A1P02461 GCOM2-201ENST00000509133 1104 ntBASIC20.03■□□□□ 0.8
COL3A1P02461 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.03■□□□□ 0.8
COL3A1P02461 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC20.03■□□□□ 0.8
COL3A1P02461 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.03■□□□□ 0.8
COL3A1P02461 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.03■□□□□ 0.8
COL3A1P02461 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC20.03■□□□□ 0.8
COL3A1P02461 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
COL3A1P02461 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL3A1P02461 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC20.02■□□□□ 0.8
COL3A1P02461 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC20.02■□□□□ 0.8
COL3A1P02461 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC20.02■□□□□ 0.8
COL3A1P02461 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
COL3A1P02461 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
COL3A1P02461 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL3A1P02461 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.02■□□□□ 0.8
COL3A1P02461 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC20.02■□□□□ 0.8
COL3A1P02461 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.02■□□□□ 0.8
COL3A1P02461 MIR6869-201ENST00000619434 62 ntBASIC20.02■□□□□ 0.8
COL3A1P02461 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL3A1P02461 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL3A1P02461 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL3A1P02461 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC20.02■□□□□ 0.8
COL3A1P02461 KRT8P4-201ENST00000509735 1454 ntBASIC20.02■□□□□ 0.8
COL3A1P02461 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.02■□□□□ 0.8
COL3A1P02461 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL3A1P02461 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL3A1P02461 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC20.01■□□□□ 0.79
COL3A1P02461 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.01■□□□□ 0.79
COL3A1P02461 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 AC009955.4-201ENST00000597192 544 ntBASIC20.01■□□□□ 0.79
COL3A1P02461 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.01■□□□□ 0.79
COL3A1P02461 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.01■□□□□ 0.79
COL3A1P02461 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.01■□□□□ 0.79
COL3A1P02461 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL3A1P02461 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC20.01■□□□□ 0.79
COL3A1P02461 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms