Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 AL390755.1-201ENST00000623716 2027 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VPS4BO75351 ARSEP1-201ENST00000420443 635 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 AC092580.3-201ENST00000430932 139 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS4BO75351 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS4BO75351 IGHV3-71-201ENST00000523324 359 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.23■□□□□ 0.03
VPS4BO75351 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS4BO75351 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 MIR6799-201ENST00000620297 69 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 AL009178.2-201ENST00000597278 2719 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 WASH3P-207ENST00000560956 1394 ntBASIC15.23■□□□□ 0.03
VPS4BO75351 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
VPS4BO75351 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VPS4BO75351 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS4BO75351 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS4BO75351 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS4BO75351 MIR346-201ENST00000362234 95 ntBASIC15.22■□□□□ 0.03
VPS4BO75351 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
VPS4BO75351 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4BO75351 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4BO75351 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4BO75351 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4BO75351 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4BO75351 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS4BO75351 HNRNPUP1-201ENST00000554987 333 ntBASIC15.22■□□□□ 0.03
VPS4BO75351 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.22■□□□□ 0.03
VPS4BO75351 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 MIR4453-201ENST00000584019 89 ntBASIC15.22■□□□□ 0.03
VPS4BO75351 AC097359.3-201ENST00000603982 1210 ntBASIC15.22■□□□□ 0.03
VPS4BO75351 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms