Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 AL645939.2-201ENST00000427340 991 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 AC005237.2-201ENST00000434368 219 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 AP000347.1-202ENST00000435868 847 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 AC069335.1-201ENST00000489972 472 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.24□□□□□ -0.29
SDCBPO00560 SLC25A39P2-201ENST00000537614 270 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 LINC01225-203ENST00000563550 1244 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
SDCBPO00560 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.24□□□□□ -0.29
SDCBPO00560 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.24□□□□□ -0.29
SDCBPO00560 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SDCBPO00560 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
SDCBPO00560 AC104581.4-201ENST00000623126 3052 ntBASIC13.24□□□□□ -0.29
SDCBPO00560 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 ZBED1P1-201ENST00000502364 1930 ntBASIC13.23□□□□□ -0.29
SDCBPO00560 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SDCBPO00560 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
SDCBPO00560 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.23□□□□□ -0.29
SDCBPO00560 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.23□□□□□ -0.29
SDCBPO00560 AC026979.3-201ENST00000607315 403 ntBASIC13.23□□□□□ -0.29
SDCBPO00560 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 AC055717.3-201ENST00000622967 595 ntBASIC13.23□□□□□ -0.29
SDCBPO00560 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.23□□□□□ -0.29
SDCBPO00560 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.23□□□□□ -0.29
SDCBPO00560 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SDCBPO00560 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms