Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TMEM178B-203ENST00000610315 10552 ntAPPRIS ALT1 TSL 5 BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 AC027020.2-201ENST00000602585 2389 ntBASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC8.55□□□□□ -1.04
CHKB-CPT1BH3BT56 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CTBP2-203ENST00000337195 6939 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 HIVEP1-209ENST00000627968 8924 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AGAP7P-201ENST00000582299 2062 ntBASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AGAP14-201ENST00000624701 2060 ntBASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SH3BP2-201ENST00000356331 9211 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ENSA-206ENST00000361631 725 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 THEM4-205ENST00000489410 643 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AC069544.1-201ENST00000609399 999 ntBASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 DLEC1-202ENST00000346219 5490 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AC112176.1-201ENST00000565428 3024 ntBASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 BCL2L13-213ENST00000538149 4797 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ERBB2-219ENST00000584601 4792 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AC114271.1-201ENST00000612689 2813 ntBASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PALLD-209ENST00000507735 4379 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 PHF8-204ENST00000357988 6024 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 TXNRD1-202ENST00000388854 4277 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SOCS6-201ENST00000397942 5848 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 IGSF9-201ENST00000361509 3996 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 CLIP1-203ENST00000361654 5568 ntTSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC8.54□□□□□ -1.04
CHKB-CPT1BH3BT56 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms