Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 RPSAP15-201ENST00000448168 861 ntBASIC11.71□□□□□ -0.54
COL6A5A8TX70 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 AC100827.2-201ENST00000563214 1194 ntBASIC11.71□□□□□ -0.54
COL6A5A8TX70 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
COL6A5A8TX70 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
COL6A5A8TX70 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC11.7□□□□□ -0.54
COL6A5A8TX70 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 FTX-216ENST00000638985 1367 ntTSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 AC140113.1-201ENST00000603467 169 ntBASIC11.7□□□□□ -0.54
COL6A5A8TX70 STK24-203ENST00000397517 4578 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 MIR1301-201ENST00000408518 82 ntBASIC11.7□□□□□ -0.54
COL6A5A8TX70 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 AL450487.2-201ENST00000615934 407 ntBASIC11.7□□□□□ -0.54
COL6A5A8TX70 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
COL6A5A8TX70 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
COL6A5A8TX70 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 BPIFB5P-201ENST00000457066 1099 ntBASIC11.69□□□□□ -0.54
COL6A5A8TX70 CISD2-202ENST00000503643 808 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms