Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 HMGN1P19-201ENST00000436976 333 ntBASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 MTND6P24-201ENST00000440466 518 ntBASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AL355385.1-201ENST00000606123 409 ntBASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AC023908.3-201ENST00000564211 3047 ntBASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AC126365.1-201ENST00000578585 1514 ntBASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AC254562.1-201ENST00000417586 456 ntBASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AP000344.2-201ENST00000512987 629 ntBASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 RN7SL828P-201ENST00000607615 303 ntBASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AC009093.7-201ENST00000623853 1223 ntBASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM56Q9BRZ2 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 AC074338.1-201ENST00000416825 156 ntBASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.85■□□□□ 0.13
TRIM56Q9BRZ2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms