Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 LINC01101-201ENST00000622953 1884 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 KRT8P37-201ENST00000451609 1420 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC004987.2-201ENST00000395959 1148 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC211486.1-202ENST00000416371 468 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC004967.1-201ENST00000453589 447 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC211476.1-201ENST00000503899 468 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 HNRNPUP1-201ENST00000554987 333 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC243562.1-201ENST00000560672 389 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC005829.1-201ENST00000570002 483 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AL596442.2-201ENST00000610240 980 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC092902.6-201ENST00000641783 218 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC005840.4-201ENST00000541242 2494 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC007292.2-201ENST00000593524 1812 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 AC005089.1-201ENST00000619486 2241 ntBASIC13.59□□□□□ -0.23
NKX3-1Q99801 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.59□□□□□ -0.23
NKX3-1Q99801 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
NKX3-1Q99801 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX3-1Q99801 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX3-1Q99801 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.23
NKX3-1Q99801 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX3-1Q99801 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
NKX3-1Q99801 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
NKX3-1Q99801 AL607033.1-201ENST00000623900 1599 ntBASIC13.58□□□□□ -0.23
NKX3-1Q99801 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX3-1Q99801 AC104581.4-201ENST00000623126 3052 ntBASIC13.58□□□□□ -0.23
NKX3-1Q99801 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
NKX3-1Q99801 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms