Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC11.98□□□□□ -0.49
CCDC140Q96MF4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 AC104457.1-201ENST00000401024 814 ntBASIC11.97□□□□□ -0.49
CCDC140Q96MF4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 FAM207CP-201ENST00000443486 507 ntBASIC11.97□□□□□ -0.49
CCDC140Q96MF4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 RRP7BP-205ENST00000566851 833 ntBASIC11.97□□□□□ -0.49
CCDC140Q96MF4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 AL132655.2-201ENST00000596276 594 ntBASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 AL049840.4-201ENST00000602422 811 ntBASIC11.97□□□□□ -0.49
CCDC140Q96MF4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 REXO1L4P-201ENST00000605109 1937 ntBASIC11.97□□□□□ -0.49
CCDC140Q96MF4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CCDC140Q96MF4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC11.96□□□□□ -0.49
CCDC140Q96MF4 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 POR-201ENST00000394893 2532 ntTSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 WASH3P-207ENST00000560956 1394 ntBASIC11.96□□□□□ -0.49
CCDC140Q96MF4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 AC067930.6-201ENST00000623257 4947 ntBASIC11.96□□□□□ -0.49
CCDC140Q96MF4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 ANKRD19P-201ENST00000338192 862 ntBASIC11.96□□□□□ -0.49
CCDC140Q96MF4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CCDC140Q96MF4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC11.96□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms