Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 METTL21AP1-201ENST00000438852 635 ntBASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 TIMM8BP1-201ENST00000452384 211 ntBASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AC009090.5-201ENST00000624886 2285 ntBASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
DEPDC4Q8N2C3 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 AC127383.1-201ENST00000444697 1800 ntBASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 AL589702.1-201ENST00000641229 1509 ntBASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 AKAP8P1-201ENST00000434743 1349 ntBASIC14.52□□□□□ -0.08
DEPDC4Q8N2C3 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC004449.1-201ENST00000564240 433 ntBASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 RARRES2P8-201ENST00000566335 367 ntBASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 AC105339.1-204ENST00000636249 355 ntBASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
DEPDC4Q8N2C3 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms