Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC025271.4-201ENST00000621477 1726 ntBASIC20.63■□□□□ 0.89
NPHP3Q7Z494 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 HPGD-203ENST00000422112 805 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 RN7SL67P-201ENST00000492147 296 ntBASIC20.63■□□□□ 0.89
NPHP3Q7Z494 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 MIR4649-201ENST00000582839 64 ntBASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC138696.2-201ENST00000607376 223 ntBASIC20.63■□□□□ 0.89
NPHP3Q7Z494 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC069224.1-201ENST00000566372 1715 ntBASIC20.63■□□□□ 0.89
NPHP3Q7Z494 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPHP3Q7Z494 AC011676.5-201ENST00000624864 2660 ntBASIC20.63■□□□□ 0.89
NPHP3Q7Z494 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AC009093.2-202ENST00000620513 2079 ntBASIC20.62■□□□□ 0.89
NPHP3Q7Z494 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 OR2K2-202ENST00000374428 1038 ntBASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AC097065.1-201ENST00000425737 517 ntBASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 AMT-239ENST00000636865 1914 ntTSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPHP3Q7Z494 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 FAM90A2P-201ENST00000511144 1395 ntBASIC20.61■□□□□ 0.89
NPHP3Q7Z494 IGHV3-37-201ENST00000518544 340 ntBASIC20.61■□□□□ 0.89
NPHP3Q7Z494 FAM90A25P-201ENST00000528404 1395 ntBASIC20.61■□□□□ 0.89
NPHP3Q7Z494 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 FOS-204ENST00000554617 796 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 AL008718.2-201ENST00000609206 1313 ntBASIC20.61■□□□□ 0.89
NPHP3Q7Z494 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 AC007718.1-201ENST00000621078 280 ntBASIC20.61■□□□□ 0.89
NPHP3Q7Z494 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 MBLAC2-202ENST00000514906 1936 ntBASIC20.61■□□□□ 0.89
NPHP3Q7Z494 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NPHP3Q7Z494 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP3Q7Z494 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms