Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15□□□□□ -0.01
FOXA1P55317 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15□□□□□ -0.01
FOXA1P55317 AL512356.2-201ENST00000546955 174 ntBASIC15□□□□□ -0.01
FOXA1P55317 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15□□□□□ -0.01
FOXA1P55317 AC011467.4-201ENST00000594891 528 ntBASIC15□□□□□ -0.01
FOXA1P55317 AC025181.2-201ENST00000606994 802 ntBASIC15□□□□□ -0.01
FOXA1P55317 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
FOXA1P55317 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA1P55317 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15□□□□□ -0.01
FOXA1P55317 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA1P55317 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 AC018529.2-202ENST00000611482 3087 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA1P55317 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 AC068587.6-202ENST00000641839 5619 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 AC117489.1-201ENST00000625169 3217 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 AL133267.1-201ENST00000398220 340 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
FOXA1P55317 AC015922.1-201ENST00000421102 1152 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 CNN2P11-201ENST00000429351 262 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.99□□□□□ -0.01
FOXA1P55317 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 AC109322.1-201ENST00000524499 1264 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 AC069262.1-201ENST00000539058 672 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA1P55317 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 SPDYE12P-201ENST00000618416 771 ntBASIC14.99□□□□□ -0.01
FOXA1P55317 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA1P55317 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA1P55317 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
FOXA1P55317 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms