Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.27□□□□□ -0.12
CDH11P55287 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.27□□□□□ -0.12
CDH11P55287 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH11P55287 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH11P55287 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.27□□□□□ -0.13
CDH11P55287 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 AL138918.1-201ENST00000568306 659 ntBASIC14.27□□□□□ -0.13
CDH11P55287 AL096865.1-201ENST00000606796 927 ntBASIC14.27□□□□□ -0.13
CDH11P55287 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH11P55287 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH11P55287 LINC00528-201ENST00000600723 2160 ntBASIC14.27□□□□□ -0.13
CDH11P55287 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH11P55287 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH11P55287 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH11P55287 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH11P55287 LINC00552-201ENST00000625151 2579 ntBASIC14.27□□□□□ -0.13
CDH11P55287 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CDH11P55287 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CDH11P55287 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.26□□□□□ -0.13
CDH11P55287 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.26□□□□□ -0.13
CDH11P55287 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 BASP1P1-201ENST00000430708 665 ntBASIC14.26□□□□□ -0.13
CDH11P55287 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.26□□□□□ -0.13
CDH11P55287 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 RNA5SP421-201ENST00000516864 134 ntBASIC14.26□□□□□ -0.13
CDH11P55287 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.26□□□□□ -0.13
CDH11P55287 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.26□□□□□ -0.13
CDH11P55287 AC024267.1-201ENST00000582320 895 ntBASIC14.26□□□□□ -0.13
CDH11P55287 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.26□□□□□ -0.13
CDH11P55287 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 FGD5P1-202ENST00000614866 2498 ntBASIC14.26□□□□□ -0.13
CDH11P55287 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.26□□□□□ -0.13
CDH11P55287 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CDH11P55287 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDH11P55287 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.26□□□□□ -0.13
CDH11P55287 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms