Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 MIR4754-201ENST00000582477 89 ntBASIC16.17■□□□□ 0.18
COL4A4P53420 AL358472.3-201ENST00000608147 415 ntBASIC16.17■□□□□ 0.18
COL4A4P53420 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.17■□□□□ 0.18
COL4A4P53420 AL805961.1-201ENST00000642026 753 ntBASIC16.17■□□□□ 0.18
COL4A4P53420 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL4A4P53420 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.17■□□□□ 0.18
COL4A4P53420 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.17■□□□□ 0.18
COL4A4P53420 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL4A4P53420 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL4A4P53420 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL4A4P53420 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL4A4P53420 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL4A4P53420 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
COL4A4P53420 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.16■□□□□ 0.18
COL4A4P53420 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL4A4P53420 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.16■□□□□ 0.18
COL4A4P53420 AC138466.3-201ENST00000619983 221 ntBASIC16.16■□□□□ 0.18
COL4A4P53420 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
COL4A4P53420 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL4A4P53420 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 AC055811.4-201ENST00000624039 1754 ntBASIC16.16■□□□□ 0.18
COL4A4P53420 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC16.16■□□□□ 0.18
COL4A4P53420 CAP2P1-201ENST00000557743 1390 ntBASIC16.16■□□□□ 0.18
COL4A4P53420 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL4A4P53420 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL4A4P53420 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 AL157791.1-201ENST00000553667 1699 ntBASIC16.15■□□□□ 0.18
COL4A4P53420 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.15■□□□□ 0.18
COL4A4P53420 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.15■□□□□ 0.18
COL4A4P53420 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.15■□□□□ 0.18
COL4A4P53420 AC090857.1-201ENST00000527400 390 ntBASIC16.15■□□□□ 0.18
COL4A4P53420 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.15■□□□□ 0.18
COL4A4P53420 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.15■□□□□ 0.18
COL4A4P53420 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.15■□□□□ 0.18
COL4A4P53420 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.15■□□□□ 0.18
COL4A4P53420 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.15■□□□□ 0.18
COL4A4P53420 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.15■□□□□ 0.18
COL4A4P53420 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL4A4P53420 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.15■□□□□ 0.18
COL4A4P53420 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 REXO1L4P-201ENST00000605109 1937 ntBASIC16.15■□□□□ 0.18
COL4A4P53420 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 AC025271.4-201ENST00000621477 1726 ntBASIC16.15■□□□□ 0.18
COL4A4P53420 AC022532.1-201ENST00000624563 1728 ntBASIC16.15■□□□□ 0.18
COL4A4P53420 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.15■□□□□ 0.18
COL4A4P53420 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.15■□□□□ 0.18
COL4A4P53420 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.15■□□□□ 0.18
COL4A4P53420 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL4A4P53420 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A4P53420 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.14■□□□□ 0.18
COL4A4P53420 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL4A4P53420 AC234644.1-201ENST00000406065 370 ntBASIC16.14■□□□□ 0.18
COL4A4P53420 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.14■□□□□ 0.18
COL4A4P53420 AC078991.1-201ENST00000437297 610 ntBASIC16.14■□□□□ 0.18
COL4A4P53420 RPL18P13-201ENST00000478088 569 ntBASIC16.14■□□□□ 0.18
COL4A4P53420 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.14■□□□□ 0.18
COL4A4P53420 AC242376.1-201ENST00000559033 726 ntBASIC16.14■□□□□ 0.18
COL4A4P53420 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.14■□□□□ 0.18
COL4A4P53420 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.14■□□□□ 0.18
COL4A4P53420 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL4A4P53420 AC051619.9-201ENST00000623237 597 ntBASIC16.14■□□□□ 0.18
COL4A4P53420 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
COL4A4P53420 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
COL4A4P53420 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A4P53420 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL4A4P53420 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms