Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.82■□□□□ 0.44
CTCFP49711 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTCFP49711 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTCFP49711 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 AC103702.1-201ENST00000548801 2630 ntBASIC17.81■□□□□ 0.44
CTCFP49711 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 BRI3P1-201ENST00000440440 378 ntBASIC17.81■□□□□ 0.44
CTCFP49711 HIST2H2BB-201ENST00000449108 381 ntBASIC17.81■□□□□ 0.44
CTCFP49711 TUBB8P8-201ENST00000458717 1058 ntBASIC17.81■□□□□ 0.44
CTCFP49711 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 FOS-204ENST00000554617 796 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17.81■□□□□ 0.44
CTCFP49711 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.81■□□□□ 0.44
CTCFP49711 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC17.81■□□□□ 0.44
CTCFP49711 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 ENPP7P14-201ENST00000621765 1040 ntBASIC17.81■□□□□ 0.44
CTCFP49711 NAP1L6-202ENST00000641404 1222 ntBASIC17.81■□□□□ 0.44
CTCFP49711 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.81■□□□□ 0.44
CTCFP49711 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTCFP49711 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.81■□□□□ 0.44
CTCFP49711 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 RN7SKP214-201ENST00000364208 315 ntBASIC17.8■□□□□ 0.44
CTCFP49711 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC17.8■□□□□ 0.44
CTCFP49711 KLF2P2-201ENST00000416807 1039 ntBASIC17.8■□□□□ 0.44
CTCFP49711 HCG27-204ENST00000424675 895 ntTSL 3 BASIC17.8■□□□□ 0.44
CTCFP49711 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.8■□□□□ 0.44
CTCFP49711 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 AC124947.2-201ENST00000547118 1133 ntBASIC17.8■□□□□ 0.44
CTCFP49711 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.8■□□□□ 0.44
CTCFP49711 HKR1-225ENST00000592168 566 ntTSL 4 BASIC17.8■□□□□ 0.44
CTCFP49711 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
CTCFP49711 AC244250.3-201ENST00000620749 366 ntBASIC17.8■□□□□ 0.44
CTCFP49711 AC068587.8-201ENST00000641239 219 ntBASIC17.8■□□□□ 0.44
CTCFP49711 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 AC004899.1-201ENST00000424687 1714 ntBASIC17.8■□□□□ 0.44
CTCFP49711 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 KRT8P4-201ENST00000509735 1454 ntBASIC17.8■□□□□ 0.44
CTCFP49711 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CTCFP49711 AL138799.1-201ENST00000448213 1675 ntBASIC17.8■□□□□ 0.44
CTCFP49711 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CTCFP49711 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CTCFP49711 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.8■□□□□ 0.44
CTCFP49711 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTCFP49711 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms