Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
RFX3P48380 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.63□□□□□ -0.07
RFX3P48380 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.63□□□□□ -0.07
RFX3P48380 PMS2P2-201ENST00000425039 1128 ntBASIC14.63□□□□□ -0.07
RFX3P48380 HIST3H2BA-201ENST00000436555 524 ntBASIC14.63□□□□□ -0.07
RFX3P48380 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.63□□□□□ -0.07
RFX3P48380 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.63□□□□□ -0.07
RFX3P48380 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.63□□□□□ -0.07
RFX3P48380 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
RFX3P48380 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RFX3P48380 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.63□□□□□ -0.07
RFX3P48380 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RFX3P48380 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
RFX3P48380 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
RFX3P48380 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 PPT1-215ENST00000641471 2368 ntBASIC14.62□□□□□ -0.07
RFX3P48380 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
RFX3P48380 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
RFX3P48380 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.62□□□□□ -0.07
RFX3P48380 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.62□□□□□ -0.07
RFX3P48380 AC092580.3-201ENST00000430932 139 ntBASIC14.62□□□□□ -0.07
RFX3P48380 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.62□□□□□ -0.07
RFX3P48380 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 AL512361.1-201ENST00000554200 418 ntBASIC14.62□□□□□ -0.07
RFX3P48380 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.62□□□□□ -0.07
RFX3P48380 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 AC015911.4-201ENST00000588022 1070 ntBASIC14.62□□□□□ -0.07
RFX3P48380 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 AC020658.6-201ENST00000623564 1870 ntBASIC14.62□□□□□ -0.07
RFX3P48380 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 AC105250.1-201ENST00000509378 2057 ntBASIC14.62□□□□□ -0.07
RFX3P48380 AC090616.6-203ENST00000579186 1945 ntBASIC14.62□□□□□ -0.07
RFX3P48380 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.62□□□□□ -0.07
RFX3P48380 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RFX3P48380 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
RFX3P48380 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms