Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
NKX2-1P43699 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.75□□□□□ -0.37
NKX2-1P43699 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
NKX2-1P43699 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.75□□□□□ -0.37
NKX2-1P43699 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 SLC4A1APP2-201ENST00000424054 1259 ntBASIC12.75□□□□□ -0.37
NKX2-1P43699 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 AF238378.1-201ENST00000526806 358 ntBASIC12.75□□□□□ -0.37
NKX2-1P43699 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 BMF-207ENST00000559701 630 ntTSL 3 BASIC12.75□□□□□ -0.37
NKX2-1P43699 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.75□□□□□ -0.37
NKX2-1P43699 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
NKX2-1P43699 AP002414.3-201ENST00000589352 1468 ntBASIC12.75□□□□□ -0.37
NKX2-1P43699 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.75□□□□□ -0.37
NKX2-1P43699 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.75□□□□□ -0.37
NKX2-1P43699 AC027601.5-201ENST00000624065 2482 ntBASIC12.75□□□□□ -0.37
NKX2-1P43699 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
NKX2-1P43699 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
NKX2-1P43699 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.74□□□□□ -0.37
NKX2-1P43699 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.74□□□□□ -0.37
NKX2-1P43699 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 METTL26-205ENST00000397666 726 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.74□□□□□ -0.37
NKX2-1P43699 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC12.74□□□□□ -0.37
NKX2-1P43699 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.74□□□□□ -0.37
NKX2-1P43699 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.74□□□□□ -0.37
NKX2-1P43699 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
NKX2-1P43699 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 HSPA7-201ENST00000445535 1927 ntBASIC12.74□□□□□ -0.37
NKX2-1P43699 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.74□□□□□ -0.37
NKX2-1P43699 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.74□□□□□ -0.37
NKX2-1P43699 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
NKX2-1P43699 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
NKX2-1P43699 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
NKX2-1P43699 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms