Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 Z97205.2-201ENST00000564697 1639 ntBASIC14.63□□□□□ -0.07
SOX3P41225 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SOX3P41225 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SOX3P41225 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.63□□□□□ -0.07
SOX3P41225 AC015922.1-201ENST00000421102 1152 ntBASIC14.63□□□□□ -0.07
SOX3P41225 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.63□□□□□ -0.07
SOX3P41225 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.63□□□□□ -0.07
SOX3P41225 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.63□□□□□ -0.07
SOX3P41225 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.63□□□□□ -0.07
SOX3P41225 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
SOX3P41225 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.63□□□□□ -0.07
SOX3P41225 LINC01115-203ENST00000606068 577 ntBASIC14.63□□□□□ -0.07
SOX3P41225 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SOX3P41225 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SOX3P41225 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
SOX3P41225 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.63□□□□□ -0.07
SOX3P41225 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SOX3P41225 AC018892.3-201ENST00000623986 2499 ntBASIC14.63□□□□□ -0.07
SOX3P41225 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SOX3P41225 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 TARDBPP1-201ENST00000442013 1203 ntBASIC14.62□□□□□ -0.07
SOX3P41225 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 TPRX2P-201ENST00000535362 881 ntBASIC14.62□□□□□ -0.07
SOX3P41225 TIMM17BP1-201ENST00000545713 516 ntBASIC14.62□□□□□ -0.07
SOX3P41225 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.62□□□□□ -0.07
SOX3P41225 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.62□□□□□ -0.07
SOX3P41225 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms