Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
RFC4P35249 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
RFC4P35249 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19.2■□□□□ 0.66
RFC4P35249 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
RFC4P35249 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC19.2■□□□□ 0.66
RFC4P35249 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 PUDPP3-201ENST00000445368 636 ntBASIC19.2■□□□□ 0.66
RFC4P35249 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 AC012044.1-201ENST00000603431 297 ntBASIC19.2■□□□□ 0.66
RFC4P35249 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19.2■□□□□ 0.66
RFC4P35249 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC4P35249 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC4P35249 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
RFC4P35249 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC19.19■□□□□ 0.66
RFC4P35249 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RFC4P35249 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 IGLV3-15-201ENST00000518356 244 ntBASIC19.19■□□□□ 0.66
RFC4P35249 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.19■□□□□ 0.66
RFC4P35249 AC103988.2-201ENST00000561804 725 ntBASIC19.19■□□□□ 0.66
RFC4P35249 DUX4L47-201ENST00000566374 394 ntBASIC19.19■□□□□ 0.66
RFC4P35249 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.19■□□□□ 0.66
RFC4P35249 AL358472.3-201ENST00000608147 415 ntBASIC19.19■□□□□ 0.66
RFC4P35249 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RFC4P35249 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.19■□□□□ 0.66
RFC4P35249 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC4P35249 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC4P35249 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
RFC4P35249 AP000593.2-201ENST00000542775 1433 ntBASIC19.18■□□□□ 0.66
RFC4P35249 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
RFC4P35249 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
RFC4P35249 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.18■□□□□ 0.66
RFC4P35249 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC19.18■□□□□ 0.66
RFC4P35249 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.18■□□□□ 0.66
RFC4P35249 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 CEP164P1-201ENST00000455142 418 ntBASIC19.18■□□□□ 0.66
RFC4P35249 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.18■□□□□ 0.66
RFC4P35249 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 HNRNPA1P36-201ENST00000521313 955 ntBASIC19.18■□□□□ 0.66
RFC4P35249 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
RFC4P35249 RTN3P1-201ENST00000536295 711 ntBASIC19.18■□□□□ 0.66
RFC4P35249 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC19.18■□□□□ 0.66
RFC4P35249 MIR4783-201ENST00000580343 82 ntBASIC19.18■□□□□ 0.66
RFC4P35249 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 AC073352.2-201ENST00000609385 439 ntBASIC19.18■□□□□ 0.66
RFC4P35249 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC19.18■□□□□ 0.66
RFC4P35249 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.18■□□□□ 0.66
RFC4P35249 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.18■□□□□ 0.66
RFC4P35249 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RFC4P35249 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.18■□□□□ 0.66
RFC4P35249 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC4P35249 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms