Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CIITAP33076 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CIITAP33076 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.35■□□□□ 0.37
CIITAP33076 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
CIITAP33076 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.34■□□□□ 0.37
CIITAP33076 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CIITAP33076 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.34■□□□□ 0.37
CIITAP33076 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.34■□□□□ 0.37
CIITAP33076 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 KRT8P35-201ENST00000483942 1338 ntBASIC17.34■□□□□ 0.37
CIITAP33076 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 AC106760.1-201ENST00000508690 800 ntBASIC17.34■□□□□ 0.37
CIITAP33076 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CIITAP33076 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.34■□□□□ 0.37
CIITAP33076 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.34■□□□□ 0.37
CIITAP33076 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.34■□□□□ 0.37
CIITAP33076 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CIITAP33076 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CIITAP33076 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.34■□□□□ 0.37
CIITAP33076 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CIITAP33076 CICP6-201ENST00000457191 2729 ntBASIC17.34■□□□□ 0.37
CIITAP33076 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.34■□□□□ 0.37
CIITAP33076 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.34■□□□□ 0.37
CIITAP33076 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CIITAP33076 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CIITAP33076 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.33■□□□□ 0.37
CIITAP33076 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CIITAP33076 AL109954.1-202ENST00000564051 2148 ntBASIC17.33■□□□□ 0.37
CIITAP33076 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CIITAP33076 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CIITAP33076 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CIITAP33076 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.33■□□□□ 0.37
CIITAP33076 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.33■□□□□ 0.36
CIITAP33076 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CIITAP33076 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.33■□□□□ 0.36
CIITAP33076 AL355864.2-201ENST00000447420 863 ntBASIC17.33■□□□□ 0.36
CIITAP33076 BCRP2-202ENST00000447763 634 ntBASIC17.33■□□□□ 0.36
CIITAP33076 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.33■□□□□ 0.36
CIITAP33076 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.33■□□□□ 0.36
CIITAP33076 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.33■□□□□ 0.36
CIITAP33076 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 BCRP6-201ENST00000510112 632 ntBASIC17.33■□□□□ 0.36
CIITAP33076 BCRP7-201ENST00000511549 544 ntBASIC17.33■□□□□ 0.36
CIITAP33076 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.33■□□□□ 0.36
CIITAP33076 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CIITAP33076 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CIITAP33076 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.33■□□□□ 0.36
CIITAP33076 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.33■□□□□ 0.36
CIITAP33076 AC013268.4-201ENST00000637413 2228 ntBASIC17.33■□□□□ 0.36
CIITAP33076 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
CIITAP33076 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.33■□□□□ 0.36
CIITAP33076 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CIITAP33076 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CIITAP33076 AL138709.1-201ENST00000614840 1693 ntBASIC17.32■□□□□ 0.36
CIITAP33076 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.32■□□□□ 0.36
CIITAP33076 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.32■□□□□ 0.36
CIITAP33076 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CIITAP33076 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms