Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC015967.2-201ENST00000624092 234 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 AC006435.4-201ENST00000625037 234 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 AL356737.1-201ENST00000634391 234 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 AL137783.1-201ENST00000623494 1896 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC20.21■□□□□ 0.83
HOXC9P31274 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXC9P31274 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXC9P31274 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 AC092850.2-201ENST00000623821 2697 ntBASIC20.2■□□□□ 0.82
HOXC9P31274 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC9P31274 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HOXC9P31274 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC9P31274 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
HOXC9P31274 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 KRT8P19-201ENST00000551916 1455 ntBASIC20.2■□□□□ 0.82
HOXC9P31274 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC9P31274 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
HOXC9P31274 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC9P31274 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC9P31274 CRCP-204ENST00000398684 492 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC9P31274 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC20.2■□□□□ 0.82
HOXC9P31274 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC20.2■□□□□ 0.82
HOXC9P31274 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC9P31274 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC9P31274 RN7SL774P-201ENST00000577467 290 ntBASIC20.2■□□□□ 0.82
HOXC9P31274 AC138696.2-201ENST00000607376 223 ntBASIC20.2■□□□□ 0.82
HOXC9P31274 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC9P31274 AL023803.2-201ENST00000620080 638 ntBASIC20.2■□□□□ 0.82
HOXC9P31274 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HOXC9P31274 AC091812.3-201ENST00000621362 345 ntBASIC20.2■□□□□ 0.82
HOXC9P31274 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC20.2■□□□□ 0.82
HOXC9P31274 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC9P31274 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC9P31274 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HOXC9P31274 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 DKFZP434H168-201ENST00000567381 1905 ntBASIC20.19■□□□□ 0.82
HOXC9P31274 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HOXC9P31274 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC20.19■□□□□ 0.82
HOXC9P31274 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.19■□□□□ 0.82
HOXC9P31274 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC20.19■□□□□ 0.82
HOXC9P31274 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC20.19■□□□□ 0.82
HOXC9P31274 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC20.19■□□□□ 0.82
HOXC9P31274 AC005740.2-201ENST00000511085 419 ntBASIC20.19■□□□□ 0.82
HOXC9P31274 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
HOXC9P31274 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC20.19■□□□□ 0.82
HOXC9P31274 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC20.19■□□□□ 0.82
HOXC9P31274 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC20.19■□□□□ 0.82
HOXC9P31274 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC20.19■□□□□ 0.82
HOXC9P31274 AC009955.4-201ENST00000597192 544 ntBASIC20.19■□□□□ 0.82
HOXC9P31274 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC20.19■□□□□ 0.82
HOXC9P31274 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.19■□□□□ 0.82
HOXC9P31274 AL162426.1-201ENST00000624141 743 ntBASIC20.19■□□□□ 0.82
HOXC9P31274 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
HOXC9P31274 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC9P31274 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.19■□□□□ 0.82
HOXC9P31274 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC9P31274 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.18■□□□□ 0.82
HOXC9P31274 PES1-204ENST00000402284 2144 ntTSL 5 BASIC20.18■□□□□ 0.82
HOXC9P31274 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC9P31274 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
HOXC9P31274 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.18■□□□□ 0.82
HOXC9P31274 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.18■□□□□ 0.82
HOXC9P31274 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.18■□□□□ 0.82
HOXC9P31274 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC9P31274 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC9P31274 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC20.18■□□□□ 0.82
HOXC9P31274 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC20.18■□□□□ 0.82
HOXC9P31274 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms