Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.76□□□□□ -0.05
SDC1P18827 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.76□□□□□ -0.05
SDC1P18827 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 REXO1L4P-201ENST00000605109 1937 ntBASIC14.76□□□□□ -0.05
SDC1P18827 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.76□□□□□ -0.05
SDC1P18827 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SDC1P18827 CICP14-201ENST00000629111 2732 ntBASIC14.76□□□□□ -0.05
SDC1P18827 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.76□□□□□ -0.05
SDC1P18827 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.76□□□□□ -0.05
SDC1P18827 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.76□□□□□ -0.05
SDC1P18827 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.76□□□□□ -0.05
SDC1P18827 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.76□□□□□ -0.05
SDC1P18827 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.76□□□□□ -0.05
SDC1P18827 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.76□□□□□ -0.05
SDC1P18827 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.76□□□□□ -0.05
SDC1P18827 AL645728.2-202ENST00000641679 227 ntBASIC14.76□□□□□ -0.05
SDC1P18827 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SDC1P18827 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.76□□□□□ -0.05
SDC1P18827 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.76□□□□□ -0.05
SDC1P18827 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.76□□□□□ -0.05
SDC1P18827 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SDC1P18827 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDC1P18827 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
SDC1P18827 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 KRT18P13-201ENST00000400056 1290 ntBASIC14.75□□□□□ -0.05
SDC1P18827 AC104457.1-201ENST00000401024 814 ntBASIC14.75□□□□□ -0.05
SDC1P18827 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 KLF2P3-201ENST00000451977 1087 ntBASIC14.75□□□□□ -0.05
SDC1P18827 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.75□□□□□ -0.05
SDC1P18827 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.75□□□□□ -0.05
SDC1P18827 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.75□□□□□ -0.05
SDC1P18827 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
SDC1P18827 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.75□□□□□ -0.05
SDC1P18827 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDC1P18827 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.75□□□□□ -0.05
SDC1P18827 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.74□□□□□ -0.05
SDC1P18827 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDC1P18827 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 AL359258.3-201ENST00000622910 2331 ntBASIC14.74□□□□□ -0.05
SDC1P18827 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDC1P18827 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms