Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.21■□□□□ 0.19
RB1P06400 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
RB1P06400 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
RB1P06400 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.21■□□□□ 0.19
RB1P06400 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.21■□□□□ 0.19
RB1P06400 RNMTL1P1-201ENST00000454103 560 ntBASIC16.21■□□□□ 0.19
RB1P06400 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.21■□□□□ 0.19
RB1P06400 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.21■□□□□ 0.19
RB1P06400 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.21■□□□□ 0.19
RB1P06400 AC005324.6-201ENST00000587972 613 ntBASIC16.21■□□□□ 0.19
RB1P06400 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.21■□□□□ 0.19
RB1P06400 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RB1P06400 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.21■□□□□ 0.19
RB1P06400 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RB1P06400 AC124067.4-201ENST00000519691 2379 ntBASIC16.21■□□□□ 0.19
RB1P06400 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RB1P06400 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RB1P06400 CLUHP2-201ENST00000426660 1303 ntBASIC16.2■□□□□ 0.18
RB1P06400 AC006480.2-201ENST00000609770 1337 ntBASIC16.2■□□□□ 0.18
RB1P06400 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
RB1P06400 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
RB1P06400 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RB1P06400 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
RB1P06400 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.2■□□□□ 0.18
RB1P06400 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.2■□□□□ 0.18
RB1P06400 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.2■□□□□ 0.18
RB1P06400 AL353637.1-201ENST00000451571 732 ntBASIC16.2■□□□□ 0.18
RB1P06400 AC234782.1-201ENST00000451950 919 ntBASIC16.2■□□□□ 0.18
RB1P06400 AC104073.2-201ENST00000453737 312 ntBASIC16.2■□□□□ 0.18
RB1P06400 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.2■□□□□ 0.18
RB1P06400 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
RB1P06400 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
RB1P06400 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 AC084364.1-201ENST00000551967 1556 ntBASIC16.2■□□□□ 0.18
RB1P06400 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.2■□□□□ 0.18
RB1P06400 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.2■□□□□ 0.18
RB1P06400 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RB1P06400 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 AC004899.1-201ENST00000424687 1714 ntBASIC16.19■□□□□ 0.18
RB1P06400 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RB1P06400 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 AC011270.2-201ENST00000624293 2550 ntBASIC16.19■□□□□ 0.18
RB1P06400 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.19■□□□□ 0.18
RB1P06400 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms