Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
APOEP02649 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.27■□□□□ 0.19
APOEP02649 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 AC006486.2-201ENST00000624246 2199 ntBASIC16.26■□□□□ 0.19
APOEP02649 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 AL133267.1-201ENST00000398220 340 ntBASIC16.26■□□□□ 0.19
APOEP02649 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.26■□□□□ 0.19
APOEP02649 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
APOEP02649 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
APOEP02649 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.26■□□□□ 0.19
APOEP02649 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
APOEP02649 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.26■□□□□ 0.19
APOEP02649 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOEP02649 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.25■□□□□ 0.19
APOEP02649 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 AC087481.3-201ENST00000602886 1894 ntBASIC16.25■□□□□ 0.19
APOEP02649 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.25■□□□□ 0.19
APOEP02649 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.25■□□□□ 0.19
APOEP02649 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.25■□□□□ 0.19
APOEP02649 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 COX20P2-201ENST00000452636 358 ntBASIC16.25■□□□□ 0.19
APOEP02649 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.25■□□□□ 0.19
APOEP02649 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.25■□□□□ 0.19
APOEP02649 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.25■□□□□ 0.19
APOEP02649 AC123567.1-201ENST00000548294 1261 ntBASIC16.25■□□□□ 0.19
APOEP02649 TP53TG3HP-202ENST00000569755 579 ntBASIC16.25■□□□□ 0.19
APOEP02649 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.25■□□□□ 0.19
APOEP02649 AC015910.1-201ENST00000579400 975 ntBASIC16.25■□□□□ 0.19
APOEP02649 AL391069.4-201ENST00000609583 481 ntBASIC16.25■□□□□ 0.19
APOEP02649 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.25■□□□□ 0.19
APOEP02649 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.25■□□□□ 0.19
APOEP02649 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.25■□□□□ 0.19
APOEP02649 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.25■□□□□ 0.19
APOEP02649 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
APOEP02649 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOEP02649 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.24■□□□□ 0.19
APOEP02649 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.24■□□□□ 0.19
APOEP02649 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms