Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC20.06■□□□□ 0.8
COL3A1P02461 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
COL3A1P02461 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC20.06■□□□□ 0.8
COL3A1P02461 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 MIR4538-201ENST00000581377 78 ntBASIC20.06■□□□□ 0.8
COL3A1P02461 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC20.06■□□□□ 0.8
COL3A1P02461 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
COL3A1P02461 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL3A1P02461 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC20.06■□□□□ 0.8
COL3A1P02461 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC20.06■□□□□ 0.8
COL3A1P02461 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC20.06■□□□□ 0.8
COL3A1P02461 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL3A1P02461 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC20.06■□□□□ 0.8
COL3A1P02461 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 HOMER2P2-201ENST00000451621 847 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 AC131206.1-201ENST00000538078 1211 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC20.05■□□□□ 0.8
COL3A1P02461 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL3A1P02461 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 GSN-215ENST00000545652 2428 ntTSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.05■□□□□ 0.8
COL3A1P02461 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC20.05■□□□□ 0.8
COL3A1P02461 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL3A1P02461 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 MIR663B-201ENST00000408361 115 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC20.05■□□□□ 0.8
COL3A1P02461 AC079178.1-201ENST00000420915 656 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.05■□□□□ 0.8
COL3A1P02461 AL591846.1-201ENST00000451736 433 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.05■□□□□ 0.8
COL3A1P02461 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
COL3A1P02461 MIR4525-201ENST00000580000 75 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC20.05■□□□□ 0.8
COL3A1P02461 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 AP001002.3-201ENST00000623482 206 ntBASIC20.05■□□□□ 0.8
COL3A1P02461 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.05■□□□□ 0.8
COL3A1P02461 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL3A1P02461 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 AC020910.5-201ENST00000623668 1865 ntBASIC20.04■□□□□ 0.8
COL3A1P02461 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC20.04■□□□□ 0.8
COL3A1P02461 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC20.04■□□□□ 0.8
COL3A1P02461 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 HTR7P1-202ENST00000624664 4411 ntBASIC20.04■□□□□ 0.8
COL3A1P02461 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC20.04■□□□□ 0.8
COL3A1P02461 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.04■□□□□ 0.8
COL3A1P02461 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.04■□□□□ 0.8
COL3A1P02461 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC20.04■□□□□ 0.8
COL3A1P02461 TLE1P1-201ENST00000422965 589 ntBASIC20.04■□□□□ 0.8
COL3A1P02461 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.04■□□□□ 0.8
COL3A1P02461 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL3A1P02461 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.04■□□□□ 0.8
COL3A1P02461 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms