Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 AC023024.2-201ENST00000623561 1993 ntBASIC14.57□□□□□ -0.08
LDB3O75112 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.57□□□□□ -0.08
LDB3O75112 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.57□□□□□ -0.08
LDB3O75112 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 VDAC1P7-201ENST00000462417 847 ntBASIC14.57□□□□□ -0.08
LDB3O75112 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.57□□□□□ -0.08
LDB3O75112 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.57□□□□□ -0.08
LDB3O75112 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.57□□□□□ -0.08
LDB3O75112 AL662799.1-202ENST00000614205 422 ntBASIC14.57□□□□□ -0.08
LDB3O75112 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 AC148477.4-201ENST00000613430 1793 ntBASIC14.57□□□□□ -0.08
LDB3O75112 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.57□□□□□ -0.08
LDB3O75112 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
LDB3O75112 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
LDB3O75112 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDB3O75112 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 AC091951.1-201ENST00000512854 2465 ntBASIC14.56□□□□□ -0.08
LDB3O75112 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.56□□□□□ -0.08
LDB3O75112 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LDB3O75112 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.56□□□□□ -0.08
LDB3O75112 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDB3O75112 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.56□□□□□ -0.08
LDB3O75112 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.56□□□□□ -0.08
LDB3O75112 ELK1P1-201ENST00000485699 580 ntBASIC14.56□□□□□ -0.08
LDB3O75112 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.56□□□□□ -0.08
LDB3O75112 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.56□□□□□ -0.08
LDB3O75112 TP53TG3HP-202ENST00000569755 579 ntBASIC14.56□□□□□ -0.08
LDB3O75112 SPDYE22P-201ENST00000582158 798 ntBASIC14.56□□□□□ -0.08
LDB3O75112 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.56□□□□□ -0.08
LDB3O75112 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
LDB3O75112 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms