Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SLC28A1O00337 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.02
SLC28A1O00337 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.96□□□□□ -0.02
SLC28A1O00337 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
SLC28A1O00337 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.95□□□□□ -0.02
SLC28A1O00337 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
SLC28A1O00337 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 AL080243.2-201ENST00000418783 582 ntBASIC14.95□□□□□ -0.02
SLC28A1O00337 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.95□□□□□ -0.02
SLC28A1O00337 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
SLC28A1O00337 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.95□□□□□ -0.02
SLC28A1O00337 AC025048.3-201ENST00000590609 569 ntBASIC14.95□□□□□ -0.02
SLC28A1O00337 AC005702.4-201ENST00000618393 416 ntBASIC14.95□□□□□ -0.02
SLC28A1O00337 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 LINC00628-201ENST00000628516 1289 ntBASIC14.95□□□□□ -0.02
SLC28A1O00337 AL645728.2-202ENST00000641679 227 ntBASIC14.95□□□□□ -0.02
SLC28A1O00337 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SLC28A1O00337 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.95□□□□□ -0.02
SLC28A1O00337 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.95□□□□□ -0.02
SLC28A1O00337 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SLC28A1O00337 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SLC28A1O00337 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SLC28A1O00337 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.94□□□□□ -0.02
SLC28A1O00337 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 AC232323.1-201ENST00000540724 2099 ntBASIC14.94□□□□□ -0.02
SLC28A1O00337 REXO1L5P-201ENST00000622260 2098 ntBASIC14.94□□□□□ -0.02
SLC28A1O00337 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SLC28A1O00337 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.94□□□□□ -0.02
SLC28A1O00337 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.94□□□□□ -0.02
SLC28A1O00337 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 AC254562.1-201ENST00000417586 456 ntBASIC14.94□□□□□ -0.02
SLC28A1O00337 AC015922.1-201ENST00000421102 1152 ntBASIC14.94□□□□□ -0.02
SLC28A1O00337 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.94□□□□□ -0.02
SLC28A1O00337 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.94□□□□□ -0.02
SLC28A1O00337 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.94□□□□□ -0.02
SLC28A1O00337 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SLC28A1O00337 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.94□□□□□ -0.02
SLC28A1O00337 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.94□□□□□ -0.02
SLC28A1O00337 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
SLC28A1O00337 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SLC28A1O00337 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms