Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.85□□□□□ -0.03
PDLIM1O00151 AC025580.3-201ENST00000617932 1424 ntBASIC14.85□□□□□ -0.03
PDLIM1O00151 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.85□□□□□ -0.03
PDLIM1O00151 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 AP001282.1-201ENST00000531301 1499 ntBASIC14.85□□□□□ -0.03
PDLIM1O00151 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 YBX2P1-201ENST00000394192 760 ntBASIC14.85□□□□□ -0.03
PDLIM1O00151 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 AL513480.1-201ENST00000451731 511 ntBASIC14.85□□□□□ -0.03
PDLIM1O00151 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.85□□□□□ -0.03
PDLIM1O00151 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.85□□□□□ -0.03
PDLIM1O00151 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.85□□□□□ -0.03
PDLIM1O00151 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.85□□□□□ -0.03
PDLIM1O00151 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 AL645728.2-201ENST00000641974 660 ntBASIC14.85□□□□□ -0.03
PDLIM1O00151 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PDLIM1O00151 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PDLIM1O00151 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 INTS4P1-203ENST00000641008 3683 ntBASIC14.85□□□□□ -0.03
PDLIM1O00151 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PDLIM1O00151 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
PDLIM1O00151 AL591122.2-201ENST00000624125 1853 ntBASIC14.84□□□□□ -0.03
PDLIM1O00151 C2-206ENST00000442278 2434 ntTSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 Z82170.1-201ENST00000625081 3192 ntBASIC14.84□□□□□ -0.03
PDLIM1O00151 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PDLIM1O00151 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.84□□□□□ -0.03
PDLIM1O00151 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.84□□□□□ -0.03
PDLIM1O00151 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.84□□□□□ -0.03
PDLIM1O00151 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 BX842568.4-201ENST00000421222 227 ntBASIC14.84□□□□□ -0.03
PDLIM1O00151 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.84□□□□□ -0.03
PDLIM1O00151 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
PDLIM1O00151 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PDLIM1O00151 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.84□□□□□ -0.03
PDLIM1O00151 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.84□□□□□ -0.03
PDLIM1O00151 MIR4515-201ENST00000584082 81 ntBASIC14.84□□□□□ -0.03
PDLIM1O00151 AC021097.1-201ENST00000607902 574 ntBASIC14.84□□□□□ -0.03
PDLIM1O00151 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.84□□□□□ -0.03
PDLIM1O00151 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PDLIM1O00151 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
PDLIM1O00151 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 ST20-AS1-201ENST00000560255 4223 ntBASIC14.84□□□□□ -0.03
PDLIM1O00151 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PDLIM1O00151 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.84□□□□□ -0.03
PDLIM1O00151 WASH6P-202ENST00000359512 1437 ntBASIC14.83□□□□□ -0.03
PDLIM1O00151 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.83□□□□□ -0.03
PDLIM1O00151 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
PDLIM1O00151 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
PDLIM1O00151 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.83□□□□□ -0.03
PDLIM1O00151 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC14.83□□□□□ -0.03
PDLIM1O00151 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PDLIM1O00151 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.04
PDLIM1O00151 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms