Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
TMX2-CTNND1H3BSU7 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRT8P37-201ENST00000451609 1420 ntBASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC022494.1-201ENST00000466044 728 ntBASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC233724.13-201ENST00000598383 410 ntBASIC15.27■□□□□ 0.04
TMX2-CTNND1H3BSU7 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TMX2-CTNND1H3BSU7 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 CDC14C-201ENST00000428251 1719 ntBASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TMX2-CTNND1H3BSU7 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms