Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AL442647.2-201ENST00000429864 857 ntBASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM39Q9HCM9 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 AP006294.1-201ENST00000415407 339 ntBASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 AC005225.4-201ENST00000557330 545 ntBASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 WASH4P-201ENST00000564273 1246 ntBASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRIM39Q9HCM9 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AC134915.1-201ENST00000426461 574 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms