Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.22■□□□□ 0.51
RNF41Q9H4P4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.21■□□□□ 0.51
RNF41Q9H4P4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ACKR1-201ENST00000368121 1240 ntBASIC18.21■□□□□ 0.51
RNF41Q9H4P4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ACTG1P3-201ENST00000431775 1114 ntBASIC18.21■□□□□ 0.51
RNF41Q9H4P4 GAPDHP21-201ENST00000450301 1010 ntBASIC18.21■□□□□ 0.51
RNF41Q9H4P4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CLUHP6-201ENST00000580789 941 ntBASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RNF41Q9H4P4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
RNF41Q9H4P4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
RNF41Q9H4P4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 AC015936.2-201ENST00000593177 259 ntBASIC18.2■□□□□ 0.5
RNF41Q9H4P4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 CICP6-201ENST00000457191 2729 ntBASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms