Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 AC104457.1-201ENST00000401024 814 ntBASIC17.72■□□□□ 0.43
USP28Q96RU2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.72■□□□□ 0.43
USP28Q96RU2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.72■□□□□ 0.43
USP28Q96RU2 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
USP28Q96RU2 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 AC140479.7-201ENST00000636301 2332 ntBASIC17.71■□□□□ 0.43
USP28Q96RU2 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.71■□□□□ 0.43
USP28Q96RU2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.71■□□□□ 0.43
USP28Q96RU2 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USP28Q96RU2 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.71■□□□□ 0.43
USP28Q96RU2 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 KRT18P43-201ENST00000469825 1281 ntBASIC17.71■□□□□ 0.43
USP28Q96RU2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.71■□□□□ 0.43
USP28Q96RU2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 AC044860.1-202ENST00000559481 777 ntBASIC17.71■□□□□ 0.43
USP28Q96RU2 AL844908.2-201ENST00000609461 460 ntBASIC17.71■□□□□ 0.43
USP28Q96RU2 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.71■□□□□ 0.43
USP28Q96RU2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.71■□□□□ 0.43
USP28Q96RU2 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
USP28Q96RU2 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
USP28Q96RU2 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USP28Q96RU2 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.71■□□□□ 0.43
USP28Q96RU2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
USP28Q96RU2 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
USP28Q96RU2 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
USP28Q96RU2 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.71■□□□□ 0.42
USP28Q96RU2 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.71■□□□□ 0.42
USP28Q96RU2 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
USP28Q96RU2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.7■□□□□ 0.42
USP28Q96RU2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
USP28Q96RU2 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.7■□□□□ 0.42
USP28Q96RU2 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.7■□□□□ 0.42
USP28Q96RU2 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
USP28Q96RU2 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
USP28Q96RU2 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
USP28Q96RU2 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.7■□□□□ 0.42
USP28Q96RU2 AC092580.3-201ENST00000430932 139 ntBASIC17.7■□□□□ 0.42
USP28Q96RU2 CNN2P2-201ENST00000443536 909 ntBASIC17.7■□□□□ 0.42
USP28Q96RU2 CNN2P3-201ENST00000450201 906 ntBASIC17.7■□□□□ 0.42
USP28Q96RU2 AC125807.1-201ENST00000483097 614 ntBASIC17.7■□□□□ 0.42
USP28Q96RU2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.7■□□□□ 0.42
USP28Q96RU2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.7■□□□□ 0.42
USP28Q96RU2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.7■□□□□ 0.42
USP28Q96RU2 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms