Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 ZEB1-AS1-208ENST00000607166 2503 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 CD82-202ENST00000342935 967 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 DNAJB3-201ENST00000446806 729 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 NME4-207ENST00000450036 985 ntTSL 3 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PGAM5P1-201ENST00000518923 814 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AC022145.2-201ENST00000598203 171 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 AL121894.2-201ENST00000602977 491 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 RN7SL828P-201ENST00000607615 303 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 CICP23-201ENST00000605013 2741 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00477Q96M19 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00477Q96M19 KRT8P12-202ENST00000472924 1397 ntBASIC11.67□□□□□ -0.54
LINC00477Q96M19 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
LINC00477Q96M19 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00477Q96M19 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms