Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC104073.2-201ENST00000453737 312 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 RN7SL48P-201ENST00000579283 293 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC018695.6-201ENST00000614011 534 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC242376.2-201ENST00000619355 883 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 AP001002.3-201ENST00000623482 206 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC074138.1-201ENST00000611182 1303 ntBASIC16.68■□□□□ 0.26
LRCH3Q96II8 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LRCH3Q96II8 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRCH3Q96II8 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AL354877.1-201ENST00000424412 413 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 AGPAT5P1-201ENST00000455855 1019 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 KRT18P43-201ENST00000469825 1281 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AC091917.2-201ENST00000505002 744 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 FAM86KP-201ENST00000509817 987 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 C2orf69P1-201ENST00000563532 1093 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AC007787.1-201ENST00000588095 1583 ntBASIC16.67■□□□□ 0.26
LRCH3Q96II8 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.67■□□□□ 0.26
LRCH3Q96II8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRCH3Q96II8 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LRCH3Q96II8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LRCH3Q96II8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LRCH3Q96II8 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LRCH3Q96II8 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
LRCH3Q96II8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
LRCH3Q96II8 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LRCH3Q96II8 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.66■□□□□ 0.26
LRCH3Q96II8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LRCH3Q96II8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms