Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ATG4AQ8WYN0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 AC005089.1-201ENST00000619486 2241 ntBASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 AL080243.2-201ENST00000418783 582 ntBASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 AC023141.5-201ENST00000458585 616 ntBASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 AC140479.7-201ENST00000636301 2332 ntBASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ATG4AQ8WYN0 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 AC117489.1-201ENST00000625169 3217 ntBASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 PCDHA3-202ENST00000532566 4594 ntBASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 SLED1-202ENST00000512051 380 ntBASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 AL589739.1-201ENST00000607720 493 ntBASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ATG4AQ8WYN0 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ATG4AQ8WYN0 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ATG4AQ8WYN0 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
ATG4AQ8WYN0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
ATG4AQ8WYN0 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
ATG4AQ8WYN0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms