Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 MIR4538-201ENST00000581377 78 ntBASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 CICP24-201ENST00000605464 2705 ntBASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 DFFBP1-201ENST00000433250 979 ntBASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 MIR4525-201ENST00000580000 75 ntBASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC023824.1-201ENST00000562945 2975 ntBASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 KRT17P8-201ENST00000540749 863 ntBASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC025181.2-201ENST00000606994 802 ntBASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC138969.3-201ENST00000546612 1459 ntBASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC138932.2-201ENST00000548268 1459 ntBASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AC126755.4-201ENST00000549796 1459 ntBASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SHROOM3Q8TF72 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 RPL13AP25-201ENST00000484130 612 ntBASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 SNX29P1-201ENST00000548357 1007 ntBASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 ZBED1P1-201ENST00000502364 1930 ntBASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 AL158070.2-201ENST00000623713 1621 ntBASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHROOM3Q8TF72 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms