Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC10.81□□□□□ -0.68
PRKDCP78527 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC10.81□□□□□ -0.68
PRKDCP78527 FOXN3-AS2-201ENST00000554071 1262 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 USB1-205ENST00000561743 1135 ntTSL 3 BASIC10.81□□□□□ -0.68
PRKDCP78527 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 AC010632.2-201ENST00000588369 1224 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 AC002044.2-201ENST00000624910 970 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 ALOX12P2-203ENST00000570921 1945 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 AC106886.4-201ENST00000623557 2502 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC10.81□□□□□ -0.68
PRKDCP78527 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 RPL3P5-201ENST00000441645 1232 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC10.81□□□□□ -0.68
PRKDCP78527 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC10.81□□□□□ -0.68
PRKDCP78527 OR2A1-AS1-210ENST00000496968 531 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 AC009884.2-201ENST00000603110 324 ntBASIC10.81□□□□□ -0.68
PRKDCP78527 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC10.81□□□□□ -0.68
PRKDCP78527 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
PRKDCP78527 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
PRKDCP78527 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC10.8□□□□□ -0.68
PRKDCP78527 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 CASP2-203ENST00000392925 616 ntTSL 3 BASIC10.8□□□□□ -0.68
PRKDCP78527 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC10.8□□□□□ -0.68
PRKDCP78527 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 RPS18P9-201ENST00000482817 460 ntBASIC10.8□□□□□ -0.68
PRKDCP78527 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC10.8□□□□□ -0.68
PRKDCP78527 AC120498.5-201ENST00000561757 299 ntBASIC10.8□□□□□ -0.68
PRKDCP78527 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 API5-208ENST00000531273 1868 ntTSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 TKT-202ENST00000423516 2075 ntTSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
PRKDCP78527 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 RN7SKP230-201ENST00000365642 335 ntBASIC10.8□□□□□ -0.68
PRKDCP78527 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC10.8□□□□□ -0.68
PRKDCP78527 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC10.8□□□□□ -0.68
PRKDCP78527 MIR3188-201ENST00000583494 85 ntBASIC10.8□□□□□ -0.68
PRKDCP78527 NF1P11-201ENST00000621292 1282 ntBASIC10.8□□□□□ -0.68
PRKDCP78527 AP000769.1-203ENST00000637245 208 ntBASIC10.8□□□□□ -0.68
PRKDCP78527 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
PRKDCP78527 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC10.8□□□□□ -0.68
PRKDCP78527 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
PRKDCP78527 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
PRKDCP78527 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
PRKDCP78527 FZD10-202ENST00000539839 3282 ntBASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms