Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.33■□□□□ 0.04
SRP54P61011 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.33■□□□□ 0.04
SRP54P61011 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
SRP54P61011 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SRP54P61011 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.33■□□□□ 0.04
SRP54P61011 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.33■□□□□ 0.04
SRP54P61011 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SRP54P61011 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 AC068587.3-201ENST00000526613 355 ntBASIC15.33■□□□□ 0.04
SRP54P61011 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.33■□□□□ 0.04
SRP54P61011 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 AP001063.1-201ENST00000568332 529 ntBASIC15.33■□□□□ 0.04
SRP54P61011 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.33■□□□□ 0.04
SRP54P61011 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.33■□□□□ 0.04
SRP54P61011 AC005252.2-201ENST00000624630 1141 ntBASIC15.33■□□□□ 0.04
SRP54P61011 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SRP54P61011 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.33■□□□□ 0.04
SRP54P61011 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 AC024909.3-201ENST00000611513 2257 ntBASIC15.32■□□□□ 0.04
SRP54P61011 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.32■□□□□ 0.04
SRP54P61011 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.32■□□□□ 0.04
SRP54P61011 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.32■□□□□ 0.04
SRP54P61011 BCRP2-202ENST00000447763 634 ntBASIC15.32■□□□□ 0.04
SRP54P61011 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SRP54P61011 BCRP6-201ENST00000510112 632 ntBASIC15.32■□□□□ 0.04
SRP54P61011 BCRP7-201ENST00000511549 544 ntBASIC15.32■□□□□ 0.04
SRP54P61011 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 AP005482.1-201ENST00000563722 1273 ntBASIC15.32■□□□□ 0.04
SRP54P61011 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 AC107373.2-201ENST00000607735 490 ntBASIC15.32■□□□□ 0.04
SRP54P61011 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SRP54P61011 MIR6775-201ENST00000617557 69 ntBASIC15.32■□□□□ 0.04
SRP54P61011 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SRP54P61011 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SRP54P61011 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.32■□□□□ 0.04
SRP54P61011 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.32■□□□□ 0.04
SRP54P61011 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.32■□□□□ 0.04
SRP54P61011 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.32■□□□□ 0.04
SRP54P61011 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.32■□□□□ 0.04
SRP54P61011 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SRP54P61011 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms