Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SUMO3P55854 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14□□□□□ -0.17
SUMO3P55854 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14□□□□□ -0.17
SUMO3P55854 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14□□□□□ -0.17
SUMO3P55854 ELK1P1-201ENST00000485699 580 ntBASIC14□□□□□ -0.17
SUMO3P55854 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 ENPP7P5-201ENST00000541031 1031 ntBASIC14□□□□□ -0.17
SUMO3P55854 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14□□□□□ -0.17
SUMO3P55854 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14□□□□□ -0.17
SUMO3P55854 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14□□□□□ -0.17
SUMO3P55854 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14□□□□□ -0.17
SUMO3P55854 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14□□□□□ -0.17
SUMO3P55854 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14□□□□□ -0.17
SUMO3P55854 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SUMO3P55854 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14□□□□□ -0.17
SUMO3P55854 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 KRT8P22-201ENST00000562317 1415 ntBASIC13.99□□□□□ -0.17
SUMO3P55854 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.99□□□□□ -0.17
SUMO3P55854 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
SUMO3P55854 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.99□□□□□ -0.17
SUMO3P55854 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.99□□□□□ -0.17
SUMO3P55854 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.99□□□□□ -0.17
SUMO3P55854 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.99□□□□□ -0.17
SUMO3P55854 AL162726.2-201ENST00000438986 1017 ntBASIC13.99□□□□□ -0.17
SUMO3P55854 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.99□□□□□ -0.17
SUMO3P55854 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.99□□□□□ -0.17
SUMO3P55854 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.99□□□□□ -0.17
SUMO3P55854 AC008494.3-201ENST00000606615 944 ntBASIC13.99□□□□□ -0.17
SUMO3P55854 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.99□□□□□ -0.17
SUMO3P55854 BX539320.1-201ENST00000623759 877 ntBASIC13.99□□□□□ -0.17
SUMO3P55854 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.99□□□□□ -0.17
SUMO3P55854 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SUMO3P55854 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 AC007787.1-201ENST00000588095 1583 ntBASIC13.99□□□□□ -0.17
SUMO3P55854 REXO1L4P-201ENST00000605109 1937 ntBASIC13.99□□□□□ -0.17
SUMO3P55854 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.99□□□□□ -0.17
SUMO3P55854 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.99□□□□□ -0.17
SUMO3P55854 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.98□□□□□ -0.17
SUMO3P55854 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SUMO3P55854 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SUMO3P55854 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SUMO3P55854 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SUMO3P55854 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SUMO3P55854 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.98□□□□□ -0.17
SUMO3P55854 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.98□□□□□ -0.17
SUMO3P55854 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms