Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
MSH6P52701 MIR648-201ENST00000385046 94 ntBASIC21.09■□□□□ 0.97
MSH6P52701 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC21.09■□□□□ 0.97
MSH6P52701 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH6P52701 NSD1-211ENST00000511258 809 ntTSL 3 BASIC21.09■□□□□ 0.97
MSH6P52701 MIR3677-201ENST00000578964 60 ntBASIC21.09■□□□□ 0.97
MSH6P52701 RPL17P45-201ENST00000586289 509 ntBASIC21.09■□□□□ 0.97
MSH6P52701 AC005632.3-201ENST00000605544 308 ntBASIC21.09■□□□□ 0.97
MSH6P52701 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH6P52701 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
MSH6P52701 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH6P52701 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH6P52701 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH6P52701 E2F3P2-201ENST00000447755 1422 ntBASIC21.08■□□□□ 0.97
MSH6P52701 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH6P52701 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
MSH6P52701 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
MSH6P52701 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH6P52701 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH6P52701 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH6P52701 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
MSH6P52701 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC21.08■□□□□ 0.96
MSH6P52701 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.96
MSH6P52701 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC21.08■□□□□ 0.96
MSH6P52701 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
MSH6P52701 AC010141.1-201ENST00000411585 623 ntBASIC21.08■□□□□ 0.96
MSH6P52701 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC21.08■□□□□ 0.96
MSH6P52701 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC21.08■□□□□ 0.96
MSH6P52701 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC21.08■□□□□ 0.96
MSH6P52701 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC21.08■□□□□ 0.96
MSH6P52701 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC21.08■□□□□ 0.96
MSH6P52701 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC21.08■□□□□ 0.96
MSH6P52701 DUX4L46-201ENST00000566845 751 ntBASIC21.08■□□□□ 0.96
MSH6P52701 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC21.08■□□□□ 0.96
MSH6P52701 MIR6858-201ENST00000620733 67 ntBASIC21.08■□□□□ 0.96
MSH6P52701 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC21.08■□□□□ 0.96
MSH6P52701 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 FKBP4P6-201ENST00000457486 1332 ntBASIC21.08■□□□□ 0.96
MSH6P52701 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH6P52701 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
MSH6P52701 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
MSH6P52701 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
MSH6P52701 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH6P52701 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH6P52701 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
MSH6P52701 RBM38-204ENST00000371219 760 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH6P52701 AL512430.1-201ENST00000392575 860 ntBASIC21.07■□□□□ 0.96
MSH6P52701 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC21.07■□□□□ 0.96
MSH6P52701 AC018463.1-201ENST00000456674 917 ntBASIC21.07■□□□□ 0.96
MSH6P52701 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH6P52701 AC130709.1-201ENST00000484779 1212 ntBASIC21.07■□□□□ 0.96
MSH6P52701 CDC23-208ENST00000505120 455 ntTSL 3 BASIC21.07■□□□□ 0.96
MSH6P52701 AC026803.1-201ENST00000569130 274 ntBASIC21.07■□□□□ 0.96
MSH6P52701 SAMD11P1-201ENST00000571429 661 ntBASIC21.07■□□□□ 0.96
MSH6P52701 AC008805.1-201ENST00000590892 364 ntBASIC21.07■□□□□ 0.96
MSH6P52701 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC21.07■□□□□ 0.96
MSH6P52701 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH6P52701 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH6P52701 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MSH6P52701 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
MSH6P52701 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
MSH6P52701 AC099398.1-201ENST00000567919 2776 ntBASIC21.06■□□□□ 0.96
MSH6P52701 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH6P52701 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC21.06■□□□□ 0.96
MSH6P52701 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC21.06■□□□□ 0.96
MSH6P52701 AL109837.1-201ENST00000603272 613 ntBASIC21.06■□□□□ 0.96
MSH6P52701 RNF146-211ENST00000609447 607 ntTSL 4 BASIC21.06■□□□□ 0.96
MSH6P52701 AL132780.4-201ENST00000624870 1135 ntBASIC21.06■□□□□ 0.96
MSH6P52701 CASP16P-204ENST00000635032 809 ntBASIC21.06■□□□□ 0.96
MSH6P52701 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH6P52701 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
MSH6P52701 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms