Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 TIAF1-201ENST00000359450 5337 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HMGB3O15347 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.56□□□□□ -0.4
HMGB3O15347 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.56□□□□□ -0.4
HMGB3O15347 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.56□□□□□ -0.4
HMGB3O15347 AC132008.2-207ENST00000454517 770 ntBASIC12.56□□□□□ -0.4
HMGB3O15347 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 PTK2-216ENST00000519881 863 ntTSL 3 BASIC12.56□□□□□ -0.4
HMGB3O15347 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.56□□□□□ -0.4
HMGB3O15347 AC139887.3-201ENST00000568585 713 ntBASIC12.56□□□□□ -0.4
HMGB3O15347 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HMGB3O15347 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 AC005332.1-201ENST00000577698 1310 ntBASIC12.56□□□□□ -0.4
HMGB3O15347 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.56□□□□□ -0.4
HMGB3O15347 MTHFR-203ENST00000376585 8094 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
HMGB3O15347 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.56□□□□□ -0.4
HMGB3O15347 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HMGB3O15347 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
HMGB3O15347 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 AC011481.3-201ENST00000623895 5594 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
HMGB3O15347 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC12.55□□□□□ -0.4
HMGB3O15347 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 SDCCAG3P1-201ENST00000589292 1150 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC12.55□□□□□ -0.4
HMGB3O15347 AC092329.2-201ENST00000598402 547 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 GGTLC5P-201ENST00000617623 998 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 AC023024.2-201ENST00000623561 1993 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 RPS6KA2-211ENST00000510118 5992 ntTSL 2 BASIC12.55□□□□□ -0.4
HMGB3O15347 AC148477.4-201ENST00000613430 1793 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
HMGB3O15347 AC140479.7-201ENST00000636301 2332 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 KRT8P44-201ENST00000441609 1350 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 COL4A6-209ENST00000545689 6380 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HMGB3O15347 FAM95B1-212ENST00000592873 4692 ntBASIC12.55□□□□□ -0.4
HMGB3O15347 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms